Uso de los modelos escondidos de Markov en biología molecular computacional
PDF

Cómo citar

Uso de los modelos escondidos de Markov en biología molecular computacional. (2013). Poliantea, 5(9). https://doi.org/10.15765/plnt.v5i9.279

Resumen

Este documento pretende hacer una revisión del uso de los modelos escondidos de Markov en el análisis de secuencias biológicas y específicamente de cómo éstos son empleados en la biología molecular computacional.
PDF

Referencias

• Asai, K., Hayamizu, S., & Handa, K. I. (1993). Prediction of Protein Secondary Structure by the Hidden Markov Model. Comput. Appl. Biosci., 9(2), 141-146.

• Baldi, P. B., S. (2001). The Machine Learning Approach. Bioinformatics. Boston: MIT Press.

• Bergeron, B. (2002.). Applied Bioinformatics Computing: An Introduction. New Jersey: Prentice Hall.

• Birney E. (2001). Hidden Markov Models in Biological Sequence Analysis. IBM Journal of Research and Development, Vol. 45 (NO. 3/4), 449-454.

• Bonneau, R., Baliga, N., Deutsch, E., Shannon, P., & Hood, L. (2004). Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1. Genome Biology, 5(8), R52.

• Brown University. (2008) Hidden Markov Models. Recuperado el 25 de abril de 2008, de http://www.cs.brown.edu/research/ai/dynamics/tutorial/Documents/ HiddenMarkovModels.html

• Eddy, S. (1996). Hidden Markov Models. Current Opinion in Structural Biology, 6(3), 361-365.

• Eisenberg, D. (2003). The discovery of the α-helix and β-sheet, the principal structural features of proteins. Proceedings of the National Academy of Sciences USA, 100, 11207-11210.

• Krogh, A. (1998). An Introduction to Hidden Markov Models for Biological Sequences. Computational Methods in Molecular Biology. Elsevier, NewYork pp. 45-63.

• Krogh, A. (1998). An Introduction to Hidden Markov Models for Biological Sequences. In S. Salzberg, Searls, D. and Kasif, S. (Ed.), Computational Methods in Molecular Biology (pp. 45-63): Elsevier.

• Krogh, A., Brown, M., Mian, I. S., Sjolander, K., & Haussler, D. (1994). Hidden Markov models in computational biology: Applications to protein modeling. J. Mol. Biol., 235, 1501-1531.

• Mukherjee, S. , Mitra S. (2005). Hidden Markov Models, Grammars, And Biology: A Tutorial. Journal of Bioinformatics and Computational Biology, 3(2 ), 491-526.

• Murzin, A., Finkelstein, AV. (1988). General architecture of the α-helical globule. Journal of Molecular Biology, 204, 749-769.

• Murzin A. G., B. S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.

• Rabiner, L. J., B. (1986). An introduction to Hidden Markov Models. ASSP Magazine also IEEE Signal Processing Magazine, 3(1 part 1), 4-16.

• Rabiner, L. R. (1989). A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE, 77, 257-286.

• Rivas, E., & Eddy, S. R. (1999). A dynamic programming algorithm for RNA structure prediction including pseudoknots. J. Mol. Biol., 285, 2053-2068.

• Searls, D. (1992). The Computational linguistics of biological sequences. Artificial Intelligence and Molecular Biology, AAAI Press, pp. 47-120

• Thorvaldsen, S. (2005). A Tutorial On Markov Models Based On Mendel’s Classical Experiments. Journal of Bioinformatics & Computational Biology, 3(6), 1441-1460.

• Tomas, V. (2005). Enhancements to Hidden Markov Models for Gene Finding and Other Biological Applications. University of Waterloo, Waterloo.

• Tooze, C. B. a. J. (1999). Introduction to Protein Structure. New York, NY: Garland Publishing.

• University of Leeds. Hidden Markov Model Tutorial. Recuperado el 25 de abril de 2007, http://www.comp.leeds.ac.uk/roger/HiddenMarkovModels/html_dev/main.html

• Wikipedia. (2008). Hidden Markov model. Retrieved. Recuperado el 26 de abril de 2008, de http://en.wikipedia.org/w/index.php?title=Hidden_Markov_ model&oldid=209207033; Page Version ID: 209207033.

Licencia de Creative Commons
Poliantea by Institución Universitaria Politécnico Grancolombiano is licensed under a Creative Commons Reconocimiento-NoComercial-SinObraDerivada 3.0 Unported License.
Creado a partir de la obra en http://www.poligran.edu.co/poliantea.